Møller, S. H., Hansen, S. W. & Sørensen, J. T. (2003). Assessing animal welfare in a strictly synchronous production system: The mink case. Animal Welfare, 12, 699-703.

Knage-Rasmussen, K. M., Rousing, T., Sørensen, J. T. & Houe, H. (2015). Assessing animal welfare in sow herds using data on meat inspection, medication and mortality. Animal, 9(3), 509-515. https://doi.org/10.1017/S1751731114002705

Amorim Franchi, G., Herskin, M. S., Tucker, C. B., Larsen, M. & Jensen, M. B. (2021). Assessing effects of dietary and milking frequency changes and injection of cabergoline during dry-off on hunger in dairy cows using 2 feed-thwarting tests. Journal of Dairy Science, 104(9), 10203-10216. https://doi.org/10.3168/jds.2020-20046

Oliveira, V. H. S. D., Sørensen, J. T. & Thomsen, P. T. (2018). Assessing farmer awareness of digital dermatitis prevalence in Danish dairy herds. Veterinary Record, 182(11), 325. https://doi.org/10.1136/vr.104515

Van, V. T. K., Sommer, S. G., Vu, C. C. & Jørgensen, H. (2010). Assessing Nitrogen and Phosphorus in Excreta from Grower-finisher Pigs Fed Prevalent Rations in Vietnam. Asian-Australasian Journal of Animal Sciences, 23(2), 279-286.

Brandl, N. (2003). Assessing pigs' health status by image analysis of postural behaviour. The Pig Journal, 52, 71-78.

Amorim Franchi, G., Jensen, M. B., Herskin, M. S., McNeill, D. & Phillips, C. (2021). Assessing response to dry-off in dairy cows kept outdoors using spontaneous behaviours and infrared thermography—a pilot study. Tropical Animal Health and Production, 53(1), Article 46. https://doi.org/10.1007/s11250-020-02487-0

Gayatri, S., Gassó-Tortajada, V. & Vaarst, M. (2016). Assessing Sustainability of Smallholder Beef Cattle Farming in Indonesia: A case study using the FAO SAFA Framework. Journal of Sustainable Development, 9(3), 236-247. https://doi.org/10.5539/jsd.v9n3p236

Metzler-Zebeli, B. U., Trevisi, P., Prates, J. A. M., Tanghe, S., Bosi, P., Canibe, N., Montagne, L., Freire, J. & Zebeli, Q. (2017). Assessing the effect of dietary inulin supplementation on gastrointestinal fermentation, digestibility and growth in pigs: A meta-analysis. Animal Feed Science and Technology, 233, 120-132. https://doi.org/10.1016/j.anifeedsci.2017.05.010

Schmidtmann, C., Schönherz, A., Guldbrandtsen, B., Marjanovic, J., Calus, M., Hinrichs, D. & Thaller, G. (2021). Assessing the genetic background and genomic relatedness of red cattle populations originating from Northern Europe. Genetics Selection Evolution, 53(1), Article 23. https://doi.org/10.1186/s12711-021-00613-6

Nielsen, S. S., Bicout, D. J., Calistri, P., Canali, E., Drewe, J. A., Garin-Bastuji, B., Gonzales Rojas, J. L., Gortazar Schmidt, C., Herskin, M., Michel, V., Miranda Chueca, M. A., Padalino, B., Pasquali, P., Roberts, H. C., Sihvonen, L. H., Spoolder, H., Stahl, K., Velarde, A., Viltrop, A. ... EFSA Panel on Animal Health and Welfare (AHAW) (2021). Assessment of animal diseases caused by bacteria resistant to antimicrobials: Dogs and cats. EFSA Journal, 19(6), Article e06680. https://doi.org/10.2903/j.efsa.2021.6680

Nielsen, S. S., Bicout, D. J., Calistri, P., Canali, E., Drewe, J. A., Garin-Bastuji, B., Gonzales Rojas, J. L., Gortazar Schmidt, C., Herskin, M., Michel, V., Miranda Chueca, M. A., Padalino, B., Pasquali, P., Roberts, H. C., Spoolder, H., Stahl, K., Velarde, A., Viltrop, A., Winckler, C. ... EFSA Panel on Animal Health and Welfare (AHAW) (2022). Assessment of animal diseases caused by bacteria resistant to antimicrobials: kept fish species. EFSA Journal, 20(2), Article e07076. https://doi.org/10.2903/j.efsa.2022.7076

Sørensen, J. T. & Sandøe, P. (Eds.) (2001). Assessment of animal welfare at farm or group level. Acta Agric. Scand., Section A, Animal Sci., 30, 134-134.

Nielsen, S. S., Bicout, D. J., Calistri, P., Canali, E., Drewe, J. A., Garin-Bastuji, B., Gonzales Rojas, J. L., Gortázar, C., Herskin, M., Michel, V., Miranda Chueca, M. Á., Padalino, B., Pasquali, P., Roberts, H. C., Spoolder, H., Ståhl, K., Velarde, A., Viltrop, A., Winckler, C. ... EFSA Panel on Animal Health and Welfare (AHAW) (2022). Assessment of listing and categorisation of animal diseases within the framework of the Animal Health Law (Regulation (EU) No 2016/429): antimicrobial-resistant Staphylococcus aureus in cattle and horses. EFSA Journal, 20(5), Article e07312. https://doi.org/10.2903/j.efsa.2022.7312

Nielsen, S. S., Bicout, D. J., Calistri, P., Canali, E., Drewe, J. A., Garin-Bastuji, B., Gonzales Rojas, J. L., Gortázar, C., Herskin, M., Michel, V., Miranda Chueca, M. Á., Padalino, B., Pasquali, P., Roberts, H. C., Spoolder, H., Ståhl, K., Velarde, A., Viltrop, A., Winckler, C. ... EFSA Panel on Animal Health and Welfare (AHAW) (2022). Assessment of listing and categorisation of animal diseases within the framework of the Animal Health Law (Regulation (EU) No 2016/429): antimicrobial-resistant Escherichia coli in dogs and cats, horses, swine, poultry, cattle, sheep and goats. EFSA Journal, 20(5), Article e07311. https://doi.org/10.2903/j.efsa.2022.7311

Nielsen, S. S., Bicout, D. J., Calistri, P., Canali, E., Drewe, J. A., Garin-Bastuji, B., Gonzales Rojas, J. L., Gortázar, C., Herskin, M., Michel, V., Miranda Chueca, M. Á., Padalino, B., Pasquali, P., Roberts, H. C., Spoolder, H., Ståhl, K., Velarde, A., Viltrop, A., Winckler, C. ... EFSA Panel on Animal Health and Welfare (AHAW) (2022). Assessment of listing and categorisation of animal diseases within the framework of the Animal Health Law (Regulation (EU) No 2016/429): antimicrobial-resistant Pseudomonas aeruginosa in dogs and cats. EFSA Journal, 20(5), Article e07310. https://doi.org/10.2903/j.efsa.2022.7310

Nielsen, S. S., Bicout, D. J., Calistri, P., Canali, E., Drewe, J. A., Garin-Bastuji, B., Gonzales Rojas, J. L., Gortázar, C., Herskin, M., Michel, V., Miranda Chueca, M. Á., Padalino, B., Pasquali, P., Roberts, H. C., Spoolder, H., Ståhl, K., Velarde, A., Viltrop, A., Winckler, C. ... EFSA Panel on Animal Health and Welfare (AHAW) (2022). Assessment of listing and categorisation of animal diseases within the framework of the Animal Health Law (Regulation (EU) No 2016/429): antimicrobial-resistant Brachyspira hyodysenteriae in swine. EFSA Journal, 20(3), Article e07124. https://doi.org/10.2903/j.efsa.2022.7124

Nielsen, S. S., Bicout, D. J., Calistri, P., Canali, E., Drewe, J. A., Garin-Bastuji, B., Gonzales Rojas, J. L., Gortázar, C., Herskin, M., Michel, V., Miranda Chueca, M. Á., Padalino, B., Pasquali, P., Roberts, H. C., Spoolder, H., Ståhl, K., Velarde, A., Viltrop, A., Winckler, C. ... EFSA Panel on Animal Health and Welfare (AHAW) (2022). Assessment of listing and categorisation of animal diseases within the framework of the Animal Health Law (Regulation (EU) No 2016/429): antimicrobial-resistant Enterococcus faecalis in poultry. EFSA Journal, 20(2), Article e07127. https://doi.org/10.2903/j.efsa.2022.7127

Nielsen, S. S., Bicout, D. J., Calistri, P., Canali, E., Drewe, J. A., Garin-Bastuji, B., Gonzales Rojas, J. L., Gortázar, C., Herskin, M., Michel, V., Miranda Chueca, M. Á., Padalino, B., Pasquali, P., Roberts, H. C., Spoolder, H., Ståhl, K., Velarde, A., Viltrop, A., Winckler, C. ... EFSA Panel on Animal Health and Welfare (AHAW) (2022). Assessment of listing and categorisation of animal diseases within the framework of the Animal Health Law (Regulation (EU) No 2016/429): antimicrobial-resistant Rhodococcus equi in horses. EFSA Journal, 20(2), Article e07081. https://doi.org/10.2903/j.efsa.2022.7081

Nielsen, S. S., Bicout, D. J., Calistri, P., Canali, E., Drewe, J. A., Garin-Bastuji, B., Gonzales Rojas, J. L., Gortázar, C., Herskin, M., Michel, V., Miranda Chueca, M. Á., Padalino, B., Pasquali, P., Roberts, H. C., Spoolder, H., Ståhl, K., Velarde, A., Viltrop, A., Winckler, C. ... EFSA Panel on Animal Health and Welfare (AHAW) (2022). Assessment of listing and categorisation of animal diseases within the framework of the Animal Health Law (Regulation (EU) No 2016/429): antimicrobial-resistant Staphylococcus pseudintermedius in dogs and cats. EFSA Journal, 20(2), Article e07080. https://doi.org/10.2903/j.efsa.2022.7080

Nielsen, S. S., Alvarez, J., Bicout, D. J., Calistri, P., Canali, E., Drewe, J. A., Garin-Bastuji, B., Gonzales Rojas, J. L., Gortázar, C., Herskin, M., Michel, V., Miranda Chueca, M. Á., Roberts, H. C., Padalino, B., Pasquali, P., Spoolder, H., Ståhl, K., Calvo, A. V., Viltrop, A. ... EFSA Panel on Animal Health and Welfare (AHAW) (2022). Assessment of listing and categorisation of animal diseases within the framework of the Animal Health Law (Regulation (EU) No 2016/429): infection with Equine Herpesvirus-1. EFSA Journal, 20(1), Article e07036. https://doi.org/10.2903/j.efsa.2022.7036

Tahamtani, F., Herskin, M. S., Foldager, L., Murrell, J., Sandercock, D. & Riber, A. B. (2021). Assessment of mobility and pain in broiler chickens with identifiable gait defects. Applied Animal Behaviour Science, 234, Article 105183. https://doi.org/10.1016/j.applanim.2020.105183

Norup, L. R., Dalgaard, T. S., Pedersen, A. R. & Juul-Madsen, H. R. (2011). Assessment of Newcastle Disease specific T cell proliferation in different inbred MHC chicken lines. Scandinavian Journal of Immunology, 74(1), 23-30. https://doi.org/10.1111/j.1365-3083.2011.02534.x

Boissy, A., Manteuffel, G., Jensen, M. B., Moe, R. O., Spruijt, B., Keeling, L. J., Winckler, C., Forkman, B., Dimitrov, I., Langbein, J., Bakken, M., Veissier, I. & Aubert, A. (2007). Assessment of positive emotions in animals to improve their welfare. Physiology & Behavior, 92, 375-397. https://doi.org/10.1016/j.physbeh.2007.02.003

Nielsen, S. S., Alvarez, J., Bicout, D. J., Calistri, P., Canali, E., Drewe, J. A., Garin-Bastuji, B., Gonzales Rojas, J. L., Gortázar Schmidt, C., Herskin, M., Michel, V., Miranda Chueca, M. Á., Padalino, B., Pasquali, P., Sihvonen, L. H., Spoolder, H., Ståhl, K., Velarde, A., Viltrop, A. ... EFSA Panel on Animal Health and Welfare (AHAW) (2022). Assessment of the control measures for category A diseases of Animal Health Law: Lumpy Skin Disease. EFSA Journal, 20(1), Article e07121. https://doi.org/10.2903/j.efsa.2022.7121

Nielsen, S. S., Alvarez, J., Bicout, D. J., Calistri, P., Canali, E., Drewe, J. A., Garin-Bastuji, B., Gonzales Rojas, J. L., Gortázar, C., Herskin, M., Michel, V., Miranda Chueca, M. Á., Padalino, B., Pasquali, P., Spoolder, H., Ståhl, K., Velarde, A., Viltrop, A., Winckler, C. ... EFSA Panel on Animal Health and Welfare (AHAW) (2022). Assessment of the control measures for category A diseases of Animal Health Law: Contagious Caprine Pleuropneumonia. EFSA Journal, 20(1), Article e07068. https://doi.org/10.2903/j.efsa.2022.7068

Nielsen, S. S., Alvarez, J., Bicout, D. J., Calistri, P., Canali, E., Drewe, J. A., Garin-Bastuji, B., Gonzales Rojas, J. L., Gortázar, C., Herskin, M., Michel, V., Miranda Chueca, M. Á., Padalino, B., Pasquali, P., Spoolder, H., Ståhl, K., Velarde, A., Viltrop, A., Winckler, C. ... EFSA Panel on Animal Health and Welfare (AHAW) (2022). Assessment of the control measures for category A diseases of Animal Health Law: Contagious Bovine Pleuropneumonia. EFSA Journal, 20(1), Article e07067. https://doi.org/10.2903/j.efsa.2022.7067

Nielsen, S. S., Alvarez, J., Bicout, D. J., Calistri, P., Canali, E., Drewe, J. A., Garin-Bastuji, B., Gonzales Rojas, J. L., Gortázar, C., Herskin, M., Michel, V., Miranda Chueca, M. Á., Padalino, B., Pasquali, P., Spoolder, H., Ståhl, K., Velarde, A., Viltrop, A., Winckler, C. ... EFSA Panel on Animal Health and Welfare (AHAW) (2022). Assessment of the control measures of category A diseases of the Animal Health Law: Infection with rinderpest virus (Rinderpest). EFSA Journal, 20(1), Article e07071. https://doi.org/10.2903/j.efsa.2022.7071

EFSA Panel on Animal Health and Welfare (AHAW) (2021). Assessment of the control measures of the category A diseases of Animal Health Law: peste des petits ruminants. EFSA Journal, 19(7), Article e06708. https://doi.org/10.2903/j.efsa.2021.6708

Nielsen, S. S., Alvarez, J., Bicout, D. J., Calistri, P., Canali, E., Drewe, J. A., Garin-Bastuji, B., Rojas, J. L. G., Schmidt, C. G., Herskin, M., Michel, V., Chueca, M. A. M., Padalino, B., Pasquali, P., Sihvonen, L. H., Spoolder, H., Stahl, K., Velarde, A., Viltrop, A. ... EFSA Panel on Animal Health and Welfare (AHAW) (2021). Assessment of the control measures of the category A diseases of Animal Health Law: Classical Swine Fever. EFSA Journal, 19(7), Article e06707. https://doi.org/10.2903/j.efsa.2021.6707

Nielsen, S. S., Alvarez, J., Bicout, D. J., Calistri, P., Canali, E., Drewe, J. A., Garin-Bastuji, B., Gonzales Rojas, J. L., Gortázar, C., Herskin, M., Michel, V., Miranda Chueca, M. Á., Roberts, H. C., Padalino, B., Pasquali, P., Spoolder, H., Ståhl, K., Calvo, A. V., Viltrop, A. ... EFSA Panel on Animal Health and Welfare (AHAW) (2022). Assessment of the control measures of the category A diseases of Animal Health Law: Rift Valley Fever. EFSA Journal, 20(1), Article e07070. https://doi.org/10.2903/j.efsa.2022.7070

Nielsen, S. S., Alvarez, J., Bicout, D. J., Calistri, P., Canali, E., Drewe, J. A., Garin-Bastuji, B., Gonzales Rojas, J. L., Schmidt, C. G., Herskin, M., Michel, V., Miranda Chueca, M. Á., Padalino, B., Pasquali, P., Spoolder, H., Ståhl, K., Velarde, A., Viltrop, A., Winckler, C. ... EFSA Panel on Animal Health and Welfare (AHAW) (2022). Assessment of the control measures of the category A diseases of Animal Health Law: Burkholderia mallei (Glanders). EFSA Journal, 20(1), Article e07069. https://doi.org/10.2903/j.efsa.2022.7069

Nielsen, S. S., Alvarez, J., Bicout, D. J., Calistri, P., Canali, E., Drewe, J. A., Garin-Bastuji, B., Gonzales Rojas, J. L., Gortázar Schmidt, C., Herskin, M., Michel, V., Miranda Chueca, M. Á., Padalino, B., Pasquali, P., Stahl, K., Calvo, A. V., Viltrop, A., Winckler, C., De Clercq, K. ... EFSA Panel on Animal Health and Welfare (EFSA AHAW Panel) (2022). Assessment of the control measures of the Category A diseases of the Animal Health Law: prohibitions in restricted zones and risk-mitigating treatments for products of animal origin and other materials. EFSA Journal, 20(8), Article e07443. https://doi.org/10.2903/j.efsa.2022.7443

Ghoorchi, T., Lund, P., Larsen, M., Hvelplund, T., Hansen-Møller, J. & Weisbjerg, M. R. (2013). Assessment of the mobile bag method for estimation of in vivo starch digestibility. Animal, 7(2), 265-271. https://doi.org/10.1017/S1751731112001504

Carlson, D., Beattie, J. H. & Poulsen, H. D. (2007). Assessment of zinc and copper status in weaned piglets in relation to dietary zinc and copper supply. Journal of Animal Physiology and Animal Nutrition, 91(1-2), 19-28. https://doi.org/10.1111/j.1439-0396.2006.00637.x

Lærke, H. N., Hedemann, M. S., Bach Knudsen, K. E., Laurinen, P., Lindberg, J. E. & Pedersen, C. (2007). Association between butyrate and short-chain fatty acid concentrations in gut contents and faeces in weaning piglets. Livestock Science, 108, 163-166. https://doi.org/10.1016/j.livsci.2007.01.041

Mogensen, L., Krohn, C. C., Sørensen, J. T., Hindhede, J. & Nielsen, L. H. (1997). Association between resting behaviour and live weight gain in dairy heifers housed in pen with different space allowance and floor type. Applied Animal Behaviour Science, 55, 11-19.

Nielsen, V. H., Larsen, N. J. & Agergaard, N. (1995). Association of DNA polymorphism in the growth-hormone gene with basal-plasma growth-hormone concentration and production traits in pigs. Journal of Animal Breeding and Genetics, 112, 205-212.

Booth, P. J., Collins, M. E., Jenner, J., Prentice, H., Ross, J., Badsberg, J. H. & Brownlie, J. (1999). Association of non-cytopathogenic bovine viral diarrhoea virus (BVDV) with bovine blastocysts: duration of viral exposure and degree of blastocyst expasion. Veterinary Record, 144, 150-152.

Kittelsen, K. E., David, B., Moe, R. O., Poulsen, H. D., Young, J. F. & Granquist, E. G. (2017). Associations among gait score, production data, abattoir registrations, and postmortem tibia measurements in broiler chickens. Poultry Science, 96(5), 1033-1040. https://doi.org/10.3382/ps/pew433

Weiby, K. V., Krizsan, S. J., Eknæs, M., Schwarm, A., Whist, A. C., Schei, I., Steinshamn, H., Lund, P., Beauchemin, K. A. & Dønnem, I. (2022). Associations among nutrient concentration, silage fermentation products, in vivo organic matter digestibility, rumen fermentation and in vitro methane yield in 78 grass silages. Animal Feed Science and Technology, 285, Article 115249. https://doi.org/10.1016/j.anifeedsci.2022.115249

Hinrichsen, L. K., Riber, A. B. & Labouriau, R. (2016). Associations between and development of welfare indicators in organic layers. Animal, 10(6), 953-960. https://doi.org/10.1017/S1751731115003018

Dybkjær, L., Paisley, L. G., Vraa-Andersen, L. & Christensen, G. (1998). Associations between behavioural indicators of ?stress? in weaner pigs and respiratory lesions at slaughter. Preventive Veterinary Medicine, 34, 175-190.

Dybkjær, L., Vraa-Andersen, L., Paisley, L. G., Møller, K., Christensen, G. & Agger, J. F. (1994). Associations between behaviour and stomach lesions in slaughter pigs. Preventive Veterinary Medicine, 19, 101-112.

Oliveira, V. H. S. D., Sørensen, J. T. & Thomsen, P. T. (2017). Associations between biosecurity practices and bovine digital dermatitis in Danish dairy herds. Journal of Dairy Science, 100(10), 8398-8408. https://doi.org/10.3168/jds.2017-12815

Wathes, D. C., Becker, F., Buggiotti, L., Crowe, M. A., Ferris, C. P., Foldager, L., Grelet, C., Hostens, M., Ingvartsen, K. L., Marchitelli, C., Salavati, M., Signorelli, F., Takeda, H., Tang, L., Cheng, Z. & GplusE Consortium (2021). Associations between circulating IGF-1 concentrations, disease status and the leukocyte transcriptome in early lactation dairy cows. Ruminants, 1(2), 147-177. https://doi.org/10.3390/ruminants1020012

Bonde, M., Rousing, T., Badsberg, J. H. & Sørensen, J. T. (2004). Associations between lying-down behaviour problems and body condition, limb disorders and skin lesions of lactating sows housed in farrowing crates in commercial sow herds. Livestock Production Science, 87(2-3), 179-187. https://doi.org/10.1016/j.livprodsci.2003.08.005

Sztandarski, P., Marchewka, J., Wojciechowski, F., Riber, A. B., Gunnarsson, S. & Horbańczuk, J. O. (2021). Associations between neck plumage and beak darkness, as well as comb size measurements and scores with ranging frequency of Sasso and Green-legged Partridge chickens. Poultry Science, 100(9), Article 101340. https://doi.org/10.1016/j.psj.2021.101340

Zheng, D. M., Bonde, M. & Sørensen, J. T. (2007). Associations between the proportion of Salmonella seropositive slaughter pigs and the presence of herd level risk factors for introduction and transmission of Salmonella in 34 Danish organic, outdoor (non-organic) and indoor finishing-pig farms. Livestock Science, 106, 189-199. https://doi.org/10.1016/j.livsci.2006.08.003

Sztandarski, P., Marchewka, J., Wojciechowski, F., Riber, A. B., Gunnarsson, S. & Horbańczuk, J. O. (2021). Associations between weather conditions and individual range use by commercial and heritage chickens. Poultry Science, 100(8), Article 101265. https://doi.org/10.1016/j.psj.2021.101265